3. Installation

3.1. Required Packages

• Python 2.7.x
• numpy >=1.10
• scipy >= 0.16
• Cython >= 0.22.1
• mpi4py >= 2.0 (optional)

1. Copy the following contents to a text file named ‘requirements.txt’

   ## To install these requirements, run
   ## pip install -U -r requirements.txt
   ## (the -U option also upgrades packages; from the second time on,
   ## just run
   ## pip install -r requirements.txt
   ##
   ## NOTE: before running the command above, you need to install a recent version
   ## of pip from the website, and then possibly install/upgrade setuptools using
   ## sudo pip install --upgrade setuptools
   ## numpy
   numpy >=1.10
   
   ## scipy
   scipy >= 0.16
   
   ##
   Cython >= 0.22.1
   
   ## mpi4py
   mpi4py >= 2.0 (optional)
   

2. Run the command

   > pip install -U -r requirements.txt
   

3.2. Install

1. Download or clone the github repository, e.g.

   > git clone https://github.com/tsudalab/combo.git
   

2. Run setup.py install

   > cd combo
   > python setup.py install
   

3.3. Uninstall

1. Delete all installed files, e.g.

   > python setup.py install --record file.txt
   > cat file.txt  | xargs rm -rvf